Two clonal lineages of Phytophthora citrophthora from citrus in South Africa represent a single phylogenetic species.
Identifieur interne : 000F48 ( Main/Exploration ); précédent : 000F47; suivant : 000F49Two clonal lineages of Phytophthora citrophthora from citrus in South Africa represent a single phylogenetic species.
Auteurs : Christoffel F J. Spies [Afrique du Sud] ; Julia C. Meitz-Hopkins [Afrique du Sud] ; Shaun D. Langenhoven [Afrique du Sud] ; Mathys C. Pretorius [Afrique du Sud] ; Adéle Mcleod [Afrique du Sud]Source :
- Mycologia [ 0027-5514 ]
Descripteurs français
- KwdFr :
- ADN fongique (composition chimique), ADN fongique (génétique), Analyse de séquence d'ADN (MeSH), Citrus (parasitologie), Données de séquences moléculaires (MeSH), Espaceur de l'ADN ribosomique (composition chimique), Espaceur de l'ADN ribosomique (génétique), Espagne (MeSH), Gènes fongiques du type conjugant (MeSH), Génotype (MeSH), Phylogenèse (MeSH), Phytophthora (génétique), Phytophthora (isolement et purification), Protéines fongiques (génétique), République d'Afrique du Sud (MeSH), Séquence nucléotidique (MeSH), Variation génétique (MeSH).
- MESH :
- composition chimique : ADN fongique, Espaceur de l'ADN ribosomique.
- génétique : ADN fongique, Espaceur de l'ADN ribosomique, Phytophthora, Protéines fongiques.
- isolement et purification : Phytophthora.
- parasitologie : Citrus.
- Analyse de séquence d'ADN, Données de séquences moléculaires, Espagne, Gènes fongiques du type conjugant, Génotype, Phylogenèse, République d'Afrique du Sud, Séquence nucléotidique, Variation génétique.
- Wicri :
- geographic : Afrique du Sud, Espagne.
English descriptors
- KwdEn :
- Base Sequence (MeSH), Citrus (parasitology), DNA, Fungal (chemistry), DNA, Fungal (genetics), DNA, Ribosomal Spacer (chemistry), DNA, Ribosomal Spacer (genetics), Fungal Proteins (genetics), Genes, Mating Type, Fungal (MeSH), Genetic Variation (MeSH), Genotype (MeSH), Molecular Sequence Data (MeSH), Phylogeny (MeSH), Phytophthora (genetics), Phytophthora (isolation & purification), Sequence Analysis, DNA (MeSH), South Africa (MeSH), Spain (MeSH).
- MESH :
- chemical , chemistry : DNA, Fungal, DNA, Ribosomal Spacer.
- chemical , genetics : DNA, Fungal, DNA, Ribosomal Spacer, Fungal Proteins.
- geographic : South Africa, Spain.
- genetics : Phytophthora.
- isolation & purification : Phytophthora.
- parasitology : Citrus.
- Base Sequence, Genes, Mating Type, Fungal, Genetic Variation, Genotype, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
Phytophthora citrophthora from citrus in eastern Corsica and Spain consists of distinct clonal lineages. In South Africa the extent of genetic variation among citrus-associated P. citrophthora isolates is unknown. This was investigated with isolates from South Africa (n =60), Spain (n =10) and six isolates representing three P. citrophthora groups CTR1, CTR2 and CTR3 previously identified with isozyme polymorphisms (Mchau and Coffey 1994). South African and Spanish isolates belonged to two lineages (G1, G2) based on an internal transcribed spacer (ITS) phylogeny, random amplified microsatellites (RAMS) and random amplified polymorphic DNA (RAPD) profiling. Although combined RAMS and RAPD data identified 14 genotypes, unweighted pair group method with arithmetic mean (UPGMA) analyses grouped the isolates into two clusters corresponding to lineages G1 and G2. Lineage G1 predominated among isolates from South Africa (92%) and Spain (100%). Phylogenetic analyses of the β-tubulin, cytochrome c oxidase subunit I (COX1) and ITS regions did not support the hypothesis that the two lineages represent distinct phylogenetic species but suggested that isozyme group CTR2 and possibly CTR3 are species distinct from P. citrophthora sensu stricto. Mating-type analyses, using tester strains from groups CTR2 and CTR3 revealed that most G1 lineage isolates (n =57) were sterile but that some were of the A1 mating type (n =8) whereas all G2 lineage isolates were A2 (n =5). The mating-type designation was confirmed with P. capsici tester strains. However, when A1 (G1 lineage) and A2 (G2 lineage including CTR1 reference isolates) mating-type isolates were paired in all possible combinations, no oogonia or antheridia were produced. This suggests that only tester strains P. capsici, CTR2 and CTR3 were able to produce sexual structures and that lineages G1 and G2 are sterile and reproductively isolated, which is supported by molecular data.
DOI: 10.3852/13-228
PubMed: 24987125
Affiliations:
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Spies</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602</wicri:regionArea><wicri:noRegion>7602</wicri:noRegion></affiliation></author><author><name sortKey="Meitz Hopkins, Julia C" sort="Meitz Hopkins, Julia C" uniqKey="Meitz Hopkins J" first="Julia C" last="Meitz-Hopkins">Julia C. Meitz-Hopkins</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602</wicri:regionArea><wicri:noRegion>7602</wicri:noRegion></affiliation></author><author><name sortKey="Langenhoven, Shaun D" sort="Langenhoven, Shaun D" uniqKey="Langenhoven S" first="Shaun D" last="Langenhoven">Shaun D. Langenhoven</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602</wicri:regionArea><wicri:noRegion>7602</wicri:noRegion></affiliation></author><author><name sortKey="Pretorius, Mathys C" sort="Pretorius, Mathys C" uniqKey="Pretorius M" first="Mathys C" last="Pretorius">Mathys C. Pretorius</name><affiliation wicri:level="1"><nlm:affiliation>Citrus Research International, Nelspruit, Mpumalanga, 1200, South Africa.</nlm:affiliation><country xml:lang="fr">Afrique du Sud</country><wicri:regionArea>Citrus Research International, Nelspruit, Mpumalanga, 1200</wicri:regionArea><wicri:noRegion>1200</wicri:noRegion></affiliation></author><author><name sortKey="Mcleod, Adele" sort="Mcleod, Adele" uniqKey="Mcleod A" first="Adéle" last="Mcleod">Adéle Mcleod</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa adelem@sun.ac.za.</nlm:affiliation><country wicri:rule="url">Afrique du Sud</country><wicri:regionArea>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602</wicri:regionArea><wicri:noRegion>7602</wicri:noRegion></affiliation></author></analytic><series><title level="j">Mycologia</title><idno type="ISSN">0027-5514</idno></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Citrus (parasitology)</term><term>DNA, Fungal (chemistry)</term><term>DNA, Fungal (genetics)</term><term>DNA, Ribosomal Spacer (chemistry)</term><term>DNA, Ribosomal Spacer (genetics)</term><term>Fungal Proteins (genetics)</term><term>Genes, Mating Type, Fungal (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Genotype (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Phylogeny (MeSH)</term><term>Phytophthora (genetics)</term><term>Phytophthora (isolation & purification)</term><term>Sequence Analysis, DNA (MeSH)</term><term>South Africa (MeSH)</term><term>Spain (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN fongique (composition chimique)</term><term>ADN fongique (génétique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Citrus (parasitologie)</term><term>Données de séquences moléculaires (MeSH)</term><term>Espaceur de l'ADN ribosomique (composition chimique)</term><term>Espaceur de l'ADN ribosomique (génétique)</term><term>Espagne (MeSH)</term><term>Gènes fongiques du type conjugant (MeSH)</term><term>Génotype (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora (génétique)</term><term>Phytophthora (isolement et purification)</term><term>Protéines fongiques (génétique)</term><term>République d'Afrique du Sud (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Variation génétique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Fungal</term><term>DNA, Ribosomal Spacer</term><term>Fungal Proteins</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>South Africa</term><term>Spain</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN fongique</term><term>Espaceur de l'ADN ribosomique</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN fongique</term><term>Espaceur de l'ADN ribosomique</term><term>Phytophthora</term><term>Protéines fongiques</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="parasitologie" xml:lang="fr"><term>Citrus</term></keywords><keywords scheme="MESH" qualifier="parasitology" xml:lang="en"><term>Citrus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Genes, Mating Type, Fungal</term><term>Genetic Variation</term><term>Genotype</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Données de séquences moléculaires</term><term>Espagne</term><term>Gènes fongiques du type conjugant</term><term>Génotype</term><term>Phylogenèse</term><term>République d'Afrique du Sud</term><term>Séquence nucléotidique</term><term>Variation génétique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Afrique du Sud</term><term>Espagne</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora citrophthora from citrus in eastern Corsica and Spain consists of distinct clonal lineages. In South Africa the extent of genetic variation among citrus-associated P. citrophthora isolates is unknown. This was investigated with isolates from South Africa (n =60), Spain (n =10) and six isolates representing three P. citrophthora groups CTR1, CTR2 and CTR3 previously identified with isozyme polymorphisms (Mchau and Coffey 1994). South African and Spanish isolates belonged to two lineages (G1, G2) based on an internal transcribed spacer (ITS) phylogeny, random amplified microsatellites (RAMS) and random amplified polymorphic DNA (RAPD) profiling. Although combined RAMS and RAPD data identified 14 genotypes, unweighted pair group method with arithmetic mean (UPGMA) analyses grouped the isolates into two clusters corresponding to lineages G1 and G2. Lineage G1 predominated among isolates from South Africa (92%) and Spain (100%). Phylogenetic analyses of the β-tubulin, cytochrome c oxidase subunit I (COX1) and ITS regions did not support the hypothesis that the two lineages represent distinct phylogenetic species but suggested that isozyme group CTR2 and possibly CTR3 are species distinct from P. citrophthora sensu stricto. Mating-type analyses, using tester strains from groups CTR2 and CTR3 revealed that most G1 lineage isolates (n =57) were sterile but that some were of the A1 mating type (n =8) whereas all G2 lineage isolates were A2 (n =5). The mating-type designation was confirmed with P. capsici tester strains. However, when A1 (G1 lineage) and A2 (G2 lineage including CTR1 reference isolates) mating-type isolates were paired in all possible combinations, no oogonia or antheridia were produced. This suggests that only tester strains P. capsici, CTR2 and CTR3 were able to produce sexual structures and that lineages G1 and G2 are sterile and reproductively isolated, which is supported by molecular data. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24987125</PMID><DateCompleted><Year>2015</Year><Month>05</Month><Day>18</Day></DateCompleted><DateRevised><Year>2014</Year><Month>11</Month><Day>25</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-5514</ISSN><JournalIssue CitedMedium="Print"><Volume>106</Volume><Issue>6</Issue><PubDate><MedlineDate>2014 Nov-Dec</MedlineDate></PubDate></JournalIssue><Title>Mycologia</Title><ISOAbbreviation>Mycologia</ISOAbbreviation></Journal><ArticleTitle>Two clonal lineages of Phytophthora citrophthora from citrus in South Africa represent a single phylogenetic species.</ArticleTitle><Pagination><MedlinePgn>1106-18</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3852/13-228</ELocationID><Abstract><AbstractText>Phytophthora citrophthora from citrus in eastern Corsica and Spain consists of distinct clonal lineages. In South Africa the extent of genetic variation among citrus-associated P. citrophthora isolates is unknown. This was investigated with isolates from South Africa (n =60), Spain (n =10) and six isolates representing three P. citrophthora groups CTR1, CTR2 and CTR3 previously identified with isozyme polymorphisms (Mchau and Coffey 1994). South African and Spanish isolates belonged to two lineages (G1, G2) based on an internal transcribed spacer (ITS) phylogeny, random amplified microsatellites (RAMS) and random amplified polymorphic DNA (RAPD) profiling. Although combined RAMS and RAPD data identified 14 genotypes, unweighted pair group method with arithmetic mean (UPGMA) analyses grouped the isolates into two clusters corresponding to lineages G1 and G2. Lineage G1 predominated among isolates from South Africa (92%) and Spain (100%). Phylogenetic analyses of the β-tubulin, cytochrome c oxidase subunit I (COX1) and ITS regions did not support the hypothesis that the two lineages represent distinct phylogenetic species but suggested that isozyme group CTR2 and possibly CTR3 are species distinct from P. citrophthora sensu stricto. Mating-type analyses, using tester strains from groups CTR2 and CTR3 revealed that most G1 lineage isolates (n =57) were sterile but that some were of the A1 mating type (n =8) whereas all G2 lineage isolates were A2 (n =5). The mating-type designation was confirmed with P. capsici tester strains. However, when A1 (G1 lineage) and A2 (G2 lineage including CTR1 reference isolates) mating-type isolates were paired in all possible combinations, no oogonia or antheridia were produced. This suggests that only tester strains P. capsici, CTR2 and CTR3 were able to produce sexual structures and that lineages G1 and G2 are sterile and reproductively isolated, which is supported by molecular data. </AbstractText><CopyrightInformation>© 2014 by The Mycological Society of America.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Spies</LastName><ForeName>Christoffel F J</ForeName><Initials>CF</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meitz-Hopkins</LastName><ForeName>Julia C</ForeName><Initials>JC</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Langenhoven</LastName><ForeName>Shaun D</ForeName><Initials>SD</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pretorius</LastName><ForeName>Mathys C</ForeName><Initials>MC</Initials><AffiliationInfo><Affiliation>Citrus Research International, Nelspruit, Mpumalanga, 1200, South Africa.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McLeod</LastName><ForeName>Adéle</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, University of Stellenbosch, Private Bag X1, Matieland, 7602, South Africa adelem@sun.ac.za.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>07</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mycologia</MedlineTA><NlmUniqueID>0400764</NlmUniqueID><ISSNLinking>0027-5514</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004271">DNA, Fungal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D021903">DNA, Ribosomal Spacer</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005656">Fungal Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002957" MajorTopicYN="N">Citrus</DescriptorName><QualifierName UI="Q000469" MajorTopicYN="Y">parasitology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004271" MajorTopicYN="N">DNA, Fungal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021903" MajorTopicYN="N">DNA, Ribosomal Spacer</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005656" MajorTopicYN="N">Fungal Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D049770" MajorTopicYN="N">Genes, Mating Type, Fungal</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013019" MajorTopicYN="N" Type="Geographic">South Africa</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N" Type="Geographic">Spain</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">RAMS</Keyword><Keyword MajorTopicYN="N">RAPDs</Keyword><Keyword MajorTopicYN="N">intraspecific variation</Keyword><Keyword MajorTopicYN="N">phylogeny</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>7</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>7</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>5</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24987125</ArticleId><ArticleId IdType="pii">13-228</ArticleId><ArticleId IdType="doi">10.3852/13-228</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Afrique du Sud</li></country></list><tree><country name="Afrique du Sud"><noRegion><name sortKey="Spies, Christoffel F J" sort="Spies, Christoffel F J" uniqKey="Spies C" first="Christoffel F J" last="Spies">Christoffel F J. Spies</name></noRegion><name sortKey="Langenhoven, Shaun D" sort="Langenhoven, Shaun D" uniqKey="Langenhoven S" first="Shaun D" last="Langenhoven">Shaun D. Langenhoven</name><name sortKey="Mcleod, Adele" sort="Mcleod, Adele" uniqKey="Mcleod A" first="Adéle" last="Mcleod">Adéle Mcleod</name><name sortKey="Meitz Hopkins, Julia C" sort="Meitz Hopkins, Julia C" uniqKey="Meitz Hopkins J" first="Julia C" last="Meitz-Hopkins">Julia C. Meitz-Hopkins</name><name sortKey="Pretorius, Mathys C" sort="Pretorius, Mathys C" uniqKey="Pretorius M" first="Mathys C" last="Pretorius">Mathys C. Pretorius</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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